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Week 42: Cellular Potts model (CPM)

Led by by Alvaro K?hn-Luque
Title: Modelling and simulation of multicellular systems using the cellular Potts model
In this part of the course the students will learn how to model and simulate multicellular and multiscale systems using the cellular Potts model and the software Morpheus: https://morpheus.gitlab.io/  It consists of a 90 minutes lecture followed by two hands-on sessions of 80 minutes each.
Lecture 14 Oct, 8:30-10:00: Modelling multicellular systems using the cellular Potts model.
Hands-on sessions 16 Oct 8:30-12:00: Getting Started with Morpheus. Simulation and analysis of simple models.
Pre-Assignment:
1) Before the lecture, students should read at least Chapter II.2: The Cellular Potts Model and Biophysical Properties of Cells, Tissues and Morphogenesis
in this book: https://www.springer.com/gp/book/9783764381011 (free download from UiO)
I attach to this mail the whole section II of the book, which is all about the cellular Potts model, in case students have time and special interest in the topic.
2) For the practical sessions, students should install the software Morpheus (https://morpheus.gitlab.io/#download) and Gnuplot (https://sourceforge.net/projects/gnuplot/files/gnuplot/) in their own laptops. In case of problems, contact Alvaro K?hn-Luque (alvaro.kohn-luque@medisin.uio.no)
 
1. Cell sorting
2. Tumor growth (xml file)
3. Networks (movie)
 
Links about the CPM:
Publisert 27. okt. 2020 12:01 - Sist endret 27. okt. 2020 12:01